prodigal.py

usage: prodigal.py

Calls ORFs with provided input assembly

optional arguments:
  -h, --help            show this help message and exit
  --assembly filepath   Path to metagenome assembly (default: None)
  --output-nucls filepath
                        Path to output nucleotide ORFs (default: None)
  --output-prots filepath
                        Path to output amino-acid ORFs (default: None)
  --cpus int            Number of processors to use. (If more than one this
                        will parallelize prodigal using GNU parallel)
                        (default: 1)
  --force               Overwrite existing output ORF filepaths (default:
                        False)