prodigal.py
usage: prodigal.py
Calls ORFs with provided input assembly
optional arguments:
-h, --help show this help message and exit
--assembly filepath Path to metagenome assembly (default: None)
--output-nucls filepath
Path to output nucleotide ORFs (default: None)
--output-prots filepath
Path to output amino-acid ORFs (default: None)
--cpus int Number of processors to use. (If more than one this
will parallelize prodigal using GNU parallel)
(default: 1)
--force Overwrite existing output ORF filepaths (default:
False)