metagenome.py

usage: metagenome.py

This script handles filtering by length and can calculate various metagenome
statistics.

optional arguments:
  -h, --help            show this help message and exit
  --assembly filepath   Path to metagenome assembly (nucleotide fasta).
                        (default: None)
  --output-fasta filepath
                        Path to output length-filtered assembly fasta file.
                        (default: None)
  --output-stats filepath
                        Path to output assembly stats table. (default: None)
  --output-gc-content filepath
                        Path to output assembly contigs' GC content and
                        length. (default: None)
  --cutoff int          Cutoff to apply to length filter (default: 3000)
  --force               Overwrite existing files (default: False)
  --verbose             Log more information to terminal. (default: False)