Autometa
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  • Getting Started
  • 🍏 Nextflow Workflow 🍏
  • 🐚 Bash Workflow 🐚
  • 📓 Bash Step by Step Tutorial 📓
  • Databases
  • Examining Results
  • Benchmarking
  • Installation
  • Autometa Python API
  • Usage
    • binning
    • taxonomy
    • config
    • common
      • external
        • hmmsearch.py
        • bowtie.py
        • samtools.py
        • hmmscan.py
        • diamond.py
        • prodigal.py
        • bedtools.py
      • kmers.py
      • exceptions.py
      • coverage.py
      • metagenome.py
      • markers.py
      • utilities.py
  • How to contribute
  • Autometa modules
  • Legacy Autometa
  • License
Autometa
  • Usage
  • common
  • external
  • Edit on GitHub

external

Table of Contents

  • hmmsearch.py
  • bowtie.py
  • samtools.py
  • hmmscan.py
  • diamond.py
  • prodigal.py
  • bedtools.py
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© Copyright 2016 - 2024, Ian J. Miller, Evan R. Rees, Izaak Miller, Shaurya Chanana, Siddharth Uppal, Kyle Wolf, Jason C. Kwan. Revision 0d9028cf. Last updated on Jun 14, 2024.

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