bedtools.py
usage: bedtools.py
Compute genome coverage from sorted BAM file
optional arguments:
-h, --help show this help message and exit
--ibam filepath Path to sorted alignment.bam
--bed filepath Path to write alignment.bed; tab-delimited
cols=[contig,length]
--output filepath Path to output coverage.tsv
--force-bed force overwrite `bed`
--force-cov force overwrite `--output`