hmmsearch.py

usage: hmmsearch.py

Filters domtblout generated from hmmsearch using provided cutoffs

optional arguments:
  -h, --help            show this help message and exit
  --domtblout DOMTBLOUT
                        Path to domtblout generated from hmmsearch -domtblout
                        <domtblout> ... <hmmfile> <seqdb>
  --cutoffs CUTOFFS     Path to cutoffs corresponding to hmmfile used with
                        hmmsearch <hmmfile> <seqdb>
  --seqdb SEQDB         Path to orfs seqdb used as input to hmmsearch ...
                        <hmmfile> <seqdb>
  --out OUT             Path to write table of markers passing provided
                        cutoffs