hmmsearch.py
usage: hmmsearch.py
Filters domtblout generated from hmmsearch using provided cutoffs
optional arguments:
-h, --help show this help message and exit
--domtblout DOMTBLOUT
Path to domtblout generated from hmmsearch -domtblout
<domtblout> ... <hmmfile> <seqdb>
--cutoffs CUTOFFS Path to cutoffs corresponding to hmmfile used with
hmmsearch <hmmfile> <seqdb>
--seqdb SEQDB Path to orfs seqdb used as input to hmmsearch ...
<hmmfile> <seqdb>
--out OUT Path to write table of markers passing provided
cutoffs