hmmscan.py
usage: hmmscan.py
Retrieves markers with provided input assembly
positional arguments:
orfs </path/to/assembly.orfs.faa>
hmmdb </path/to/hmmpressed/hmmdb>
cutoffs </path/to/hmm/cutoffs.tsv>
hmmscan </path/to/hmmscan.tblout>
markers </path/to/markers.tsv>
optional arguments:
-h, --help show this help message and exit
--force force overwrite of out filepath
--cpus CPUS num cpus to use
--parallel enable hmmer multithreaded parallelization
--gnu-parallel enable GNU parallelization