hmmscan.py

usage: hmmscan.py

Retrieves markers with provided input assembly

positional arguments:
  orfs            </path/to/assembly.orfs.faa>
  hmmdb           </path/to/hmmpressed/hmmdb>
  cutoffs         </path/to/hmm/cutoffs.tsv>
  hmmscan         </path/to/hmmscan.tblout>
  markers         </path/to/markers.tsv>

optional arguments:
  -h, --help      show this help message and exit
  --force         force overwrite of out filepath
  --cpus CPUS     num cpus to use
  --parallel      enable hmmer multithreaded parallelization
  --gnu-parallel  enable GNU parallelization