majority_vote.py

usage: majority_vote.py

Script to assign taxonomy via a modified majority voting algorithm.

optional arguments:
  -h, --help            show this help message and exit
  --lca LCA             Path to LCA results table. (default: None)
  --output OUTPUT       Path to write voted taxid results table. (default:
                        None)
  --dbdir DBDIR         Path to taxonomy database directory. (default:
                        NCBI_DIR)
  --dbtype {ncbi,gtdb}  Taxonomy database to use (default: ncbi)
  --orfs ORFS           Path to ORFs fasta containing amino-acid sequences to
                        be annotated. (Only required for prodigal version <
                        2.6) (default: None)
  --verbose             Add verbosity to logging stream. (default: False)