metagenome.py
usage: metagenome.py
This script handles filtering by length and can calculate various metagenome
statistics.
optional arguments:
-h, --help show this help message and exit
--assembly filepath Path to metagenome assembly (nucleotide fasta).
(default: None)
--output-fasta filepath
Path to output length-filtered assembly fasta file.
(default: None)
--output-stats filepath
Path to output assembly stats table. (default: None)
--output-gc-content filepath
Path to output assembly contigs' GC content and
length. (default: None)
--cutoff int Cutoff to apply to length filter (default: 3000)
--force Overwrite existing files (default: False)
--verbose Log more information to terminal. (default: False)