Autometa
2.0.0
Getting Started
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Databases
Examining Results
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Installation
Autometa Python API
Usage
Contributing Guidelines
Autometa modules
Legacy Autometa
License
Autometa
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Index
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Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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M
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P
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R
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S
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T
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U
_
__str__() (autometa.common.exceptions.DatabaseOutOfSyncError method)
A
align() (in module autometa.common.external.bowtie)
autometa
module
autometa.binning
module
autometa.common
module
autometa.common.exceptions
module
autometa.common.external
module
autometa.common.external.bowtie
module
autometa.common.external.samtools
module
autometa.config
module
autometa.config.environ
module
autometa.config.utilities
module
autometa.datasets
module
autometa.taxonomy
module
autometa.validation
module
AutometaError
B
bedtools() (in module autometa.config.environ)
BinningError
bowtie2() (in module autometa.config.environ)
build() (in module autometa.common.external.bowtie)
C
ChecksumMismatchError
configure() (in module autometa.config.environ)
D
DatabaseOutOfSyncError
diamond() (in module autometa.config.environ)
E
ExternalToolError
F
find_executables() (in module autometa.config.environ)
G
get_config() (in module autometa.config.utilities)
get_versions() (in module autometa.config.environ)
H
hmmpress() (in module autometa.config.environ)
hmmscan() (in module autometa.config.environ)
hmmsearch() (in module autometa.config.environ)
M
main() (in module autometa.common.external.bowtie)
(in module autometa.common.external.samtools)
(in module autometa.config.utilities)
module
autometa
autometa.binning
autometa.common
autometa.common.exceptions
autometa.common.external
autometa.common.external.bowtie
autometa.common.external.samtools
autometa.config
autometa.config.environ
autometa.config.utilities
autometa.datasets
autometa.taxonomy
autometa.validation
P
parse_args() (in module autometa.config.utilities)
prodigal() (in module autometa.config.environ)
put_config() (in module autometa.config.utilities)
R
run() (in module autometa.common.external.bowtie)
S
samtools() (in module autometa.config.environ)
set_home_dir() (in module autometa.config.utilities)
sort() (in module autometa.common.external.samtools)
T
TableFormatError
U
update_config() (in module autometa.config.utilities)
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v: 2.0.0
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