Usage

Table of Contents

• binning
  • summary.py
  • large_data_mode.py
  • unclustered_recruitment.py
  • recursive_dbscan.py
  • large_data_mode_loginfo.py
  • utilities.py
• taxonomy
  • database.py
  • vote.py
  • download_gtdb_files.py
  • majority_vote.py
  • lca.py
  • ncbi.py
  • gtdb.py
• config
  • environ.py
  • databases.py
  • utilities.py
• common
  • external
    • hmmsearch.py
    • bowtie.py
    • samtools.py
    • hmmscan.py
    • diamond.py
    • prodigal.py
    • bedtools.py
  • kmers.py
  • exceptions.py
  • coverage.py
  • metagenome.py
  • markers.py
  • utilities.py