=======
vote.py
=======

.. code-block:: bash

	usage: vote.py

	Filter metagenome by taxonomy.

	optional arguments:
	  -h, --help            show this help message and exit
	  --votes filepath      Input path to voted taxids table. should contain (at
	                        least) 'contig' and 'taxid' columns (default: None)
	  --assembly filepath   Path to metagenome assembly (nucleotide fasta).
	                        (default: None)
	  --output dirpath      Output directory to write specified canonical ranks
	                        fasta files and taxon-binning results table (default:
	                        None)
	  --prefix str          prefix to use for each file written e.g.
	                        `prefix`.taxonomy.tsv. Note: Do not use a directory
	                        prefix. (default: None)
	  --split-rank-and-write {superkingdom,phylum,class,order,family,genus,species}
	                        If specified, will split contigs by provided
	                        canonical-rank column then write to `output` directory
	                        (default: None)
	  --dbdir dirpath       Path to taxonomy database directory. (default:
	                        NCBI_DIR)
	  --dbtype {ncbi,gtdb}  Taxonomy database to use (default: ncbi)