===========
samtools.py
===========

.. code-block:: bash

	usage: samtools.py

	Takes a sam file, sorts it and returns the output to a bam file

	positional arguments:
	  sam          </path/to/alignment.sam>
	  bam          </path/to/output/alignment.bam>

	optional arguments:
	  -h, --help   show this help message and exit
	  --cpus CPUS  Number of processors to use