===========
bedtools.py
===========

.. code-block:: bash

	usage: bedtools.py

	Compute genome coverage from sorted BAM file

	optional arguments:
	  -h, --help         show this help message and exit
	  --ibam filepath    Path to sorted alignment.bam
	  --bed filepath     Path to write alignment.bed; tab-delimited
	                     cols=[contig,length]
	  --output filepath  Path to output coverage.tsv
	  --force-bed        force overwrite `bed`
	  --force-cov        force overwrite `--output`