autometa.validation package
===========================

Submodules
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autometa.validation.assess\_metagenome\_deconvolution module
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.. automodule:: autometa.validation.assess_metagenome_deconvolution
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autometa.validation.benchmark module
------------------------------------

.. automodule:: autometa.validation.benchmark
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autometa.validation.build\_protein\_marker\_aln module
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.. automodule:: autometa.validation.build_protein_marker_aln
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autometa.validation.calculate\_f1\_scores module
------------------------------------------------

.. automodule:: autometa.validation.calculate_f1_scores
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autometa.validation.cami module
-------------------------------

.. automodule:: autometa.validation.cami
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autometa.validation.cluster\_process module
-------------------------------------------

.. automodule:: autometa.validation.cluster_process
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autometa.validation.cluster\_process\_docker module
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.. automodule:: autometa.validation.cluster_process_docker
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autometa.validation.cluster\_taxonomy module
--------------------------------------------

.. automodule:: autometa.validation.cluster_taxonomy
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autometa.validation.compile\_reference\_training\_table module
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.. automodule:: autometa.validation.compile_reference_training_table
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autometa.validation.confidence\_vs\_accuracy module
---------------------------------------------------

.. automodule:: autometa.validation.confidence_vs_accuracy
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autometa.validation.datasets module
-----------------------------------

.. automodule:: autometa.validation.datasets
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autometa.validation.download\_random\_bacterial\_genomes module
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.. automodule:: autometa.validation.download_random_bacterial_genomes
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autometa.validation.length\_vs\_accuracy module
-----------------------------------------------

.. automodule:: autometa.validation.length_vs_accuracy
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autometa.validation.make\_simulated\_metagenome module
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.. automodule:: autometa.validation.make_simulated_metagenome
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autometa.validation.make\_simulated\_metagenome\_control\_fasta module
----------------------------------------------------------------------

.. automodule:: autometa.validation.make_simulated_metagenome_control_fasta
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autometa.validation.reference\_genome\_from\_quast module
---------------------------------------------------------

.. automodule:: autometa.validation.reference_genome_from_quast
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autometa.validation.show\_clusters module
-----------------------------------------

.. automodule:: autometa.validation.show_clusters
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autometa.validation.summarize\_f1\_stats module
-----------------------------------------------

.. automodule:: autometa.validation.summarize_f1_stats
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autometa.validation.tabulate\_bins module
-----------------------------------------

.. automodule:: autometa.validation.tabulate_bins
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autometa.validation.tabulate\_metaquast\_alignments module
----------------------------------------------------------

.. automodule:: autometa.validation.tabulate_metaquast_alignments
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autometa.validation.vizualize\_assembly\_graph\_by\_bin module
--------------------------------------------------------------

.. automodule:: autometa.validation.vizualize_assembly_graph_by_bin
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Module contents
---------------

.. automodule:: autometa.validation
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